| School | District or agency | Grades served | Notes |
| DeWitt Anderson School | County Office of Education | | Alternative school |
| Escuela Quetzal | County Office of Education | | Alternative school |
| El Nido | County Office of Education | | Alternative school |
| Lighthouse High School | County Office of Education | | Alternative school |
| Loudon Nelson Community School | County Office of Education | | Alternative school |
| Natural Bridges High School/Green Careers Center | County Office of Education | | Alternative school |
| Oasis High School | County Office of Education | | Alternative school |
| Ponderosa School | County Office of Education | | Alternative school |
| Robert A. Hartman School | County Office of Education | | Alternative school |
| San Lorenzo Valley Community School | County Office of Education | | Alternative school |
| Santa Cruz Community School | County Office of Education | | Alternative school |
| Seabright School | County Office of Education | | Alternative school |
| Sequoia Schools | County Office of Education | | |
| Star Community School | County Office of Education | | Alternative school |
| Wagner Cottage | County Office of Education | | Alternative school |
| Bonny Doon Elementary | Bonny Doon Union Elementary School District | K–6 | |
| Happy Valley Elementary School | Happy Valley Union Elementary School District | K–6 | |
| Del Mar Elementary School | Live Oak School District | K–5 | |
| Green Acres Elementary School | Live Oak School District | K–5 | |
| Live Oak Elementary School | Live Oak School District | K–5 | |
| Ocean Alternative Education School | Live Oak School District | K–5 | |
| Tierra Pacifica Charter School | Live Oak School District | K–8 | |
| Shoreline Middle School | Live Oak School District | 6–8 | |
| Cypress Charter High School | County Office of Education | 9–12 | Alternative school |
| Mountain Elementary School | Mountain Elementary School District | K–6 | |
| Pacific Elementary School | Pacific Elementary School District | K–6 | |
| Alianza Elementary School | Pajaro Valley Unified School District | K–5 | |
| Amesti Elementary School | Pajaro Valley Unified School District | K–5 | |
| Ann Soldo Elementary School | Pajaro Valley Unified School District | K–5 | |
| Bradley Elementary School | Pajaro Valley Unified School District | K–5 | |
| Calabasas Elementary School | Pajaro Valley Unified School District | K–5 | |
| Freedom Elementary School | Pajaro Valley Unified School District | K–5 | |
| H.A. Hyde Elementary School | Pajaro Valley Unified School District | K–5 | |
| Hall Elementary School | Pajaro Valley Unified School District | K–5 | |
| Landmark Elementary School | Pajaro Valley Unified School District | K–5 | |
| Linscott Charter School | Pajaro Valley Unified School District | K–5 | |
| MacQuiddy Elementary School | Pajaro Valley Unified School District | K–5 | |
| Mar Vista Elementary School | Pajaro Valley Unified School District | K–5 | |
| Mintie White Elementary School | Pajaro Valley Unified School District | K–5 | |
| Ohlone Elementary School | Pajaro Valley Unified School District | K–5 | |
| Radcliff Elementary School | Pajaro Valley Unified School District | K–5 | |
| Rio Del Mar Elementary School | Pajaro Valley Unified School District | K–5 | |
| Starlight Elementary School | Pajaro Valley Unified School District | K–5 | |
| Valencia Elementary School | Pajaro Valley Unified School District | K–5 | |
| Academic Vocational Charter Institute | Pajaro Valley Unified School District | 9–12 | |
| Aptos High School | Pajaro Valley Unified School District | 9–12 | |
| Aptos Junior High School | Pajaro Valley Unified School District | | |
| Duncan Holbert School | Pajaro Valley Unified School District | | |
| E.A. Hall Middle School | Pajaro Valley Unified School District | 6–8 | |
| Lakeview Middle School | Pajaro Valley Unified School District | 6–8 | |
| New School | Pajaro Valley Unified School District | | |
| Pacific Coast Charter School | Pajaro Valley Unified School District | | |
| Pajaro Middle School | Pajaro Valley Unified School District | 6–8 | |
| Pajaro Valley High School | Pajaro Valley Unified School District | 9–12 | |
| Renaissance High School | Pajaro Valley Unified School District | 9–12 | |
| Rolling Hills Middle School | Pajaro Valley Unified School District | 6–8 | |
| Watsonville-Aptos Adult School | Pajaro Valley Unified School District | | |
| Watsonville Charter School of the Arts | Pajaro Valley Unified School District | K–12 | |
| Watsonville High School | Pajaro Valley Unified School District | 9–12 | |
| Boulder Creek Elementary School | San Lorenzo Valley Unified School District | K–5 | |
| San Lorenzo Valley Elementary School | San Lorenzo Valley Unified School District | K–5 | |
| San Lorenzo Valley Middle School | San Lorenzo Valley Unified School District | 6–8 | |
| San Lorenzo Valley High School | San Lorenzo Valley Unified School District | K–5 | |
| Charter Program | San Lorenzo Valley Unified School District | K–12 | - SLV Homeschool (Title 1), K–12
- Boulder Creek Homeschool (Title 3), K–6
- Fall Creek Homeschool (Title 4), K–6
- Coast Redwood Middle Homeschool (Title 5), 6–8
- Coast Redwood High School (Title 8), 9–12
- Nature Academy (Title 11), 6–8
- Mountain Independent Studies (Title 72), K–6
|
| Alternative Family Education | Santa Cruz City School District | K–12 | |
| Bay View Elementary School | Santa Cruz City School District | K–5 | |
| DeLaveaga Elementary School | Santa Cruz City School District | K–5 | |
| Gault Elementary School | Santa Cruz City School District | K–5 | |
| Monarch Community School | Santa Cruz City School District | K–5 | |
| Westlake Elementary School | Santa Cruz City School District | K–5 | |
| Ark Independent Studies | Santa Cruz City School District | 9–12 | |
| Branciforte Middle School | Santa Cruz City School District | 6–8 | |
| Costanoa Continuation School | Santa Cruz City School District | 9–12 | |
| Delta School | Santa Cruz City School District | 9–12 | Charter school |
| Harbor High School | Santa Cruz City School District | 9–12 | |
| Mission Hill Middle School | Santa Cruz City School District | 6–8 | |
| Santa Cruz Adult School | Santa Cruz City School District | | |
| Santa Cruz High School | Santa Cruz City School District | 9–12 | |
| Soquel High School | Santa Cruz City School District | 9–12 | |
| Pacific Collegiate School | County Office of Education | 7–12 | Charter school |
| Brook Knoll Elementary School | Scotts Valley Unified School District | K–5 | |
| Vine Hill Elementary School | Scotts Valley Unified School District | K–5 | |
| Scotts Valley Middle School | Scotts Valley Unified School District | 6–8 | |
| Scotts Valley High School | Scotts Valley Unified School District | 9–12 | |
| Main Street Elementary School | Soquel Union Elementary School District | K–5 | |
| Santa Cruz Gardens Elementary School | Soquel Union Elementary School District | K–5 | |
| Soquel Elementary School | Soquel Union Elementary School District | K–5 | |
| New Brighton Middle School | Soquel Union Elementary School District | 6–8 | |