| Match | Date | Team | Score | Team | Venue | Attendance |
| 1 | 2013.03.03 | Tokyo Verdy | 0-1 | Avispa Fukuoka | Ajinomoto Stadium | 10,447 |
| 2 | 2013.03.10 | Kyoto Sanga FC | 0-0 | Tokyo Verdy | Kyoto Nishikyogoku Athletic Stadium | 7,293 |
| 3 | 2013.03.17 | Tokyo Verdy | 1-1 | Fagiano Okayama | Ajinomoto Stadium | 3,951 |
| 4 | 2013.03.20 | Giravanz Kitakyushu | 1-1 | Tokyo Verdy | Honjo Stadium | 4,509 |
| 5 | 2013.03.24 | Tokyo Verdy | 1-1 | Roasso Kumamoto | Ajinomoto Stadium | 3,291 |
| 6 | 2013.03.31 | Tokyo Verdy | 3-0 | FC Gifu | Ajinomoto Stadium | 3,068 |
| 7 | 2013.04.07 | Gamba Osaka | 0-0 | Tokyo Verdy | Expo '70 Commemorative Stadium | 10,010 |
| 8 | 2013.04.14 | Tokyo Verdy | 3-0 | Gainare Tottori | Ajinomoto Stadium | 3,916 |
| 9 | 2013.04.17 | Tokyo Verdy | 2-0 | Montedio Yamagata | Ajinomoto Stadium | 3,057 |
| 11 | 2013.04.28 | Kataller Toyama | 1-1 | Tokyo Verdy | Toyama Stadium | 4,883 |
| 12 | 2013.05.03 | Tokyo Verdy | 1-3 | Yokohama FC | Ajinomoto Stadium | 15,022 |
| 13 | 2013.05.06 | Thespakusatsu Gunma | 0-1 | Tokyo Verdy | Shoda Shoyu Stadium Gunma | 3,856 |
| 14 | 2013.05.12 | Tokyo Verdy | 2-1 | Vissel Kobe | Tokyo National Stadium | 7,464 |
| 10 | 2013.05.15 | Matsumoto Yamaga FC | 0-0 | Tokyo Verdy | Matsumotodaira Park Stadium | 8,855 |
| 15 | 2013.05.19 | Consadole Sapporo | 1-1 | Tokyo Verdy | Sapporo Atsubetsu Stadium | 7,171 |
| 16 | 2013.05.26 | Tokushima Vortis | 2-1 | Tokyo Verdy | Pocarisweat Stadium | 3,312 |
| 17 | 2013.06.01 | Tokyo Verdy | 2-1 | Ehime FC | Ajinomoto Stadium | 4,268 |
| 18 | 2013.06.08 | Tokyo Verdy | 0-0 | Mito HollyHock | Komazawa Olympic Park Stadium | 5,840 |
| 19 | 2013.06.15 | V-Varen Nagasaki | 2-1 | Tokyo Verdy | Nagasaki Stadium | 5,678 |
| 20 | 2013.06.22 | Tokyo Verdy | 3-3 | Tochigi SC | Ajinomoto Stadium | 4,210 |
| 21 | 2013.06.29 | JEF United Chiba | 2-1 | Tokyo Verdy | Fukuda Denshi Arena | 11,425 |
| 22 | 2013.07.03 | Tokyo Verdy | 0-5 | Kyoto Sanga FC | Ajinomoto Stadium | 2,539 |
| 23 | 2013.07.07 | Gainare Tottori | 1-1 | Tokyo Verdy | Tottori Bank Bird Stadium | 4,330 |
| 24 | 2013.07.14 | Tokyo Verdy | 2-1 | Consadole Sapporo | Ajinomoto Stadium | 5,753 |
| 25 | 2013.07.20 | Yokohama FC | 2-3 | Tokyo Verdy | NHK Spring Mitsuzawa Football Stadium | 7,324 |
| 26 | 2013.07.27 | Tokyo Verdy | 3-3 | Gamba Osaka | Ajinomoto Stadium | 18,705 |
| 27 | 2013.08.04 | Avispa Fukuoka | 2-3 | Tokyo Verdy | Level5 Stadium | 5,218 |
| 28 | 2013.08.11 | Tokyo Verdy | 2-1 | V-Varen Nagasaki | Ajinomoto Stadium | 3,537 |
| 29 | 2013.08.18 | Fagiano Okayama | 2-0 | Tokyo Verdy | Kanko Stadium | 9,762 |
| 30 | 2013.08.21 | Vissel Kobe | 2-1 | Tokyo Verdy | Noevir Stadium Kobe | 6,916 |
| 31 | 2013.08.25 | Tokyo Verdy | 1-3 | Matsumoto Yamaga FC | Ajinomoto Stadium | 6,544 |
| 32 | 2013.09.01 | FC Gifu | 1-2 | Tokyo Verdy | Gifu Nagaragawa Stadium | 4,180 |
| 33 | 2013.09.16 | Roasso Kumamoto | 2-1 | Tokyo Verdy | Umakana-Yokana Stadium | 6,102 |
| 34 | 2013.09.23 | Tokyo Verdy | 1-0 | JEF United Chiba | Komazawa Olympic Park Stadium | 10,061 |
| 35 | 2013.09.29 | Tokyo Verdy | 2-1 | Thespakusatsu Gunma | Tokyo National Stadium | 9,002 |
| 36 | 2013.10.06 | Ehime FC | 4-0 | Tokyo Verdy | Ningineer Stadium | 6,060 |
| 37 | 2013.10.20 | Tochigi SC | 4-2 | Tokyo Verdy | Tochigi Green Stadium | 4,278 |
| 38 | 2013.10.27 | Tokyo Verdy | 1-0 | Giravanz Kitakyushu | Ajinomoto Stadium | 3,761 |
| 39 | 2013.11.03 | Tokyo Verdy | 1-2 | Kataller Toyama | Ajinomoto Stadium | 3,988 |
| 40 | 2013.11.10 | Mito HollyHock | 1-0 | Tokyo Verdy | K's denki Stadium Mito | 4,773 |
| 41 | 2013.11.17 | Tokyo Verdy | 1-1 | Tokushima Vortis | Ajinomoto Stadium | 4,777 |
| 42 | 2013.11.24 | Montedio Yamagata | 0-0 | Tokyo Verdy | ND Soft Stadium Yamagata | 7,118 |