| City served / Location | ICAO | IATA | Airport name | Coordinates |
| International | | | | |
| Kaunas | EYKA | KUN | Kaunas International Airport | 54°57′50″N 024°05′05″E / 54.96389°N 24.08472°E / 54.96389; 24.08472 (Kaunas International Airport) |
| Palanga | EYPA | PLQ | Palanga International Airport | 55°58′24″N 021°05′38″E / 55.97333°N 21.09389°E / 55.97333; 21.09389 (Palanga International Airport) |
| Šiauliai | EYSA | SQQ | Šiauliai International Airport (CIV/MIL) | 55°53′38″N 023°23′42″E / 55.89389°N 23.39500°E / 55.89389; 23.39500 (Šiauliai International Airport) |
| Vilnius | EYVI | VNO | Vilnius International Airport | 54°38′13″N 025°17′16″E / 54.63694°N 25.28778°E / 54.63694; 25.28778 (Vilnius International Airport) |
| Domestic | | | | |
| Akmenė | EYNA | | Akmenė Airport (Akmenė Aero Club) | 56°14′34″N 022°43′58″E / 56.24278°N 22.73278°E / 56.24278; 22.73278 (Akmenė Airport) |
| Alytus | EYAL | | Alytus Airport (Alytus Aero Club) | 54°24′47″N 024°03′25″E / 54.41306°N 24.05694°E / 54.41306; 24.05694 (Alytus Airport) |
| Barysiai / Šiauliai | EYSB | HLJ | Barysiai Airport (Šiauliai Airport) (CIV/MIL) | 56°04′17″N 023°33′11″E / 56.07139°N 23.55306°E / 56.07139; 23.55306 (Barysiai Airport) |
| Biržai | EYBI | | Biržai Airport (Biržai Aero Club) | 56°10′29″N 024°45′53″E / 56.17472°N 24.76472°E / 56.17472; 24.76472 (Biržai Airport) |
| Druskininkai | EYDR | | Druskininkai Airport | 54°00′59″N 023°56′37″E / 54.01639°N 23.94361°E / 54.01639; 23.94361 (Druskininkai Airport) |
| Jurbarkas | EYJB | | Jurbarkas Airport | 55°07′05″N 22°45′54″E / 55.11806°N 22.76500°E / 55.11806; 22.76500 (Jurbarkas Airport) |
| Kartena / Klaipėda | EYKT | | Kartena Airport (Klaipėda Glider Club) | 55°55′13″N 021°34′02″E / 55.92028°N 21.56722°E / 55.92028; 21.56722 (Kartena Airport) |
| Kaunas | EYKG | | Kaunas/Gamykla Airport (Kaunas State Aviation Enterprise) | 54°52′46″N 023°54′18″E / 54.87944°N 23.90500°E / 54.87944; 23.90500 (Kaunas/Gamykla Airport) |
| Kaunas | EYKS | | S. Darius and S. Girėnas Airport | 54°52′49″N 023°52′55″E / 54.88028°N 23.88194°E / 54.88028; 23.88194 (S. Darius and S. Girėnas Airport) |
| Kazlų Rūda | EYKR | | Kazlų Rūda Air Base (MIL) | 54°48′20″N 23°31′59″E / 54.80556°N 23.53306°E / 54.80556; 23.53306 (Kazlų Rūda Air Base) |
| Kėdainiai | EYKD | | Kėdainiai Airport | 55°18′42″N 023°57′12″E / 55.31167°N 23.95333°E / 55.31167; 23.95333 (Kėdainiai Airport) |
| Klaipėda | EYKL | KLJ | Klaipėda Airport | 55°42′43″N 021°14′34″E / 55.71194°N 21.24278°E / 55.71194; 21.24278 (Klaipėda Airport) |
| Kyviškės | EYVK | | Kyviškės Airfield (MIL) | 54°40′05″N 25°30′56″E / 54.66806°N 25.51556°E / 54.66806; 25.51556 (Kyviškes Airfield) |
| Molėtai | EYMO | | Molėtai Airport (Molėtai Aero Club) | 55°06′47″N 025°20′12″E / 55.11306°N 25.33667°E / 55.11306; 25.33667 (Molėtai Airport) |
| Nemirseta | EYNE | | Nemirseta Airport | 55°51′42″N 021°04′44″E / 55.86167°N 21.07889°E / 55.86167; 21.07889 (Molėtai Airport) |
| Nida | EYND | | Nida Airport | 55°19′40″N 021°02′44″E / 55.32778°N 21.04556°E / 55.32778; 21.04556 (Nida Airport) |
| Paluknys / Vilnius | EYVP | | Paluknys Airport (Vilnius Aero Club) | 54°28′59″N 024°59′23″E / 54.48306°N 24.98972°E / 54.48306; 24.98972 (Paluknys Airport) |
| Panevėžys | EYPN | | Panevėžys Airport (Panevėžys Aero Club) | 55°42′32″N 024°20′43″E / 55.70889°N 24.34528°E / 55.70889; 24.34528 (Panevėžys Airport) |
| Panevėžys / Istra | EYPI | | Panevėžys/Istra Airport (Aerodromas "Istra") | 55°49′39″N 024°21′23″E / 55.82750°N 24.35639°E / 55.82750; 24.35639 (Panevėžys/Istra Airport) |
| Panevėžys | EYPP | PNV | Panevėžys Air Base (Pajuostis) | 55°43′48″N 024°27′36″E / 55.73000°N 24.46000°E / 55.73000; 24.46000 (Panevėžys Air Base (Pajuostis)) |
| Pikeliškės | EYPK | | Pikeliškės Airport | |
| Pociūnai / Kaunas | EYPR | | Pociūnai Airport (Kaunas Parachute Club) | 54°39′13″N 024°03′26″E / 54.65361°N 24.05722°E / 54.65361; 24.05722 (Pociūnai Airport) |
| Rojūnai | EYRO | | Rojūnai Airport | 55°36′40″N 024°13′03″E / 55.61111°N 24.21750°E / 55.61111; 24.21750 (Rojūnai Airport) |
| Rokiškis | EYRK | | Rokiškis Airport | 55°58′19″N 25°36′15″E / 55.97194°N 25.60417°E / 55.97194; 25.60417 (Rokiškis Airport) |
| Rūdiškės | EYRD | | Rūdiškės Airport | 54°29′49″N 023°43′06″E / 54.49694°N 23.71833°E / 54.49694; 23.71833 (Rūdiškės Airport) |
| Rukla / Jonava | EYRU | | Rukla Airport (Jonava Airport) | 55°00′36″N 024°21′48″E / 55.01000°N 24.36333°E / 55.01000; 24.36333 (Rukla Airport) |
| Sasnava | EYMM | | Sasnava Airport (Marijampolė Aero Club) | 54°39′44″N 023°27′08″E / 54.66222°N 23.45222°E / 54.66222; 23.45222 (Sasnava Airport) |
| Šeduva / Šiauliai | EYSE | | Šeduva Airport (Šiauliai Aero Club) | 55°44′42″N 023°48′31″E / 55.74500°N 23.80861°E / 55.74500; 23.80861 (Šeduva Airport) |
| Šilutė | EYSI | | Šilutė Airport (MIL) | 55°20′13″N 21°31′50″E / 55.33694°N 21.53056°E / 55.33694; 21.53056 (Šilutė Airport) |
| Tauragė | EYTR | | Tauragė Airport (Tauragė Aero Club) | 55°13′54″N 022°09′01″E / 55.23167°N 22.15028°E / 55.23167; 22.15028 (Tauragė Airport) |
| Telšiai | EYTL | | Telšiai Airport (Telšiai Aero Club) | 55°59′15″N 022°17′33″E / 55.98750°N 22.29250°E / 55.98750; 22.29250 (Telšiai Airport) |
| Tirkšliai / Mažeikiai | EYMA | | Tirkšliai Airport (Mažeikiai Aviation Sport Club) | 56°13′43″N 022°15′17″E / 56.22861°N 22.25472°E / 56.22861; 22.25472 (Tirkšliai Airport) |
| Utena | EYUT | | Utena Airport (Utena Aero Club) | 55°29′21″N 025°43′06″E / 55.48917°N 25.71833°E / 55.48917; 25.71833 (Utena Airport) |
| Zarasai | EYZA | | Zarasai Airport (Zarasai Aero Club) | 55°45′09″N 026°15′25″E / 55.75250°N 26.25694°E / 55.75250; 26.25694 (Zarasai Airport) |
| Žėkiškės | EYZE | | Žėkiškės Airport | |
